Databases
The following data resources are hosted by ELIXIR Ireland associated researchers:
| Database | Description |
|---|---|
| DARNED |
A database of human RNA editing. It has not been
updated for a while, but is still surprisingly
popular. PMID:
20547637,
23074185; DOI:
10.1093/bioinformatics/btq285,
10.1093/nar/gks961.
Maintainer: Pavel Baranov |
| RiboSeq Data Portal |
A metadata repository of publicly available available
ribosome profiling datasets and facilitating
data-driven discoveries in the field of translation
regulation. A component of
https://riboseq.org. PMID:
39540432
; DOI:
10.1093/nar/gkae1020.
Maintainer: Pavel Baranov |
| GWIPS-viz |
A genome browser for the visualisation of public
ribosome profiling data aligned to genomes. A
component of
https://riboseq.org. PMID:
28977460,
24185699,
29927076; DOI:
10.1093/nar/gkx790 ,
10.1093/nar/gkt1035,
10.1093/nar/gkx790,
10.1002/cpbi.50.
Maintainer: Pavel Baranov |
| Trips-viz |
A computational environment for the analysis and
visualisation of public and user-generated ribosome
profiling data mapped to transcriptomes. A component
of
https://riboseq.org. PMID:
30239879 ,
33950201
; DOI:
10.1093/nar/gky842,
10.1093/nar/gkab323.
Maintainer: Pavel Baranov |
| CancerGD |
Database of cancer genetic dependencies identified in
CRISPR/RNAi screens. PMID:
28711281; DOI:
10.1016/j.cels.2017.06.002.
Maintainer: Colm Ryan |
| ParalogSL |
Database of predicted synthetic lethal interactions
between paralogs in cancer. PMID:
34529928; DOI:
10.1016/j.cels.2021.08.006
.
Maintainer: Colm Ryan |